STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZD8PDZ domain containing 8. (1167 aa)    
Predicted Functional Partners:
PRKACB
Protein kinase cAMP-activated catalytic subunit beta.
    
  0.845
RAB7A
RAB7A, member RAS oncogene family.
    
 
 0.844
PRKX
Protein kinase X-linked.
    
  0.779
THAP1
THAP domain containing 1.
    
  0.679
ENSCPUP00000027575
annotation not available
    
  0.679
NSD3
Nuclear receptor binding SET domain protein 3.
      
 0.514
ZFYVE27
Protrudin.
      
 0.513
BCAP29
B cell receptor associated protein 29.
      
 0.509
LNPK
Lunapark, ER junction formation factor.
    
 
 0.493
LOC106900354
Phosphofurin acidic cluster sorting protein 1-like.
      
 0.476
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.