STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THYN1Thymocyte nuclear protein 1. (316 aa)    
Predicted Functional Partners:
NDUFS7
NADH:ubiquinone oxidoreductase core subunit S7.
     
 0.843
PWWP3A
PWWP domain containing 3A, DNA repair factor.
     
 0.841
ENSCPUP00000007088
annotation not available
   
 
  0.746
NPVF
Neuropeptide VF precursor.
   
 
  0.746
LOC106885583
Cytochrome c.
   
 
  0.746
CLCC1
Chloride channel CLIC like 1.
    
  0.725
SURF1
Surfeit 1.
    
  0.725
ENSCPUP00000000088
annotation not available
    
  0.596
HTATIP2
HIV-1 Tat interactive protein 2.
    
  0.596
TMEM254
Transmembrane protein 254.
    
  0.596
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.