STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZRANB1Zinc finger RANBP2-type containing 1. (708 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
   
 0.930
TRAF6
TNF receptor associated factor 6.
    
 0.898
ENSCPUP00000011075
annotation not available
    
  0.883
RIPK4
Receptor interacting serine/threonine kinase 4.
   
 0.794
UBXN7
UBX domain protein 7.
   
   0.779
APC
APC regulator of WNT signaling pathway.
    
  0.712
APC2
APC regulator of WNT signaling pathway 2.
    
  0.712
MAP3K9
Mitogen-activated protein kinase kinase kinase 9.
   
 0.680
MAP3K21
Mitogen-activated protein kinase kinase kinase 21.
   
 0.680
TNNI3K
TNNI3 interacting kinase.
   
 0.680
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.