STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBA3Ubiquitin like modifier activating enzyme 3. (463 aa)    
Predicted Functional Partners:
NAE1
NEDD8 activating enzyme E1 subunit 1.
   
0.999
ENSCPUP00000027571
annotation not available
    
 0.991
TRIP12
Thyroid hormone receptor interactor 12.
    
 0.988
BIRC6
Baculoviral IAP repeat containing 6.
  
 0.984
UBE2F
Ubiquitin conjugating enzyme E2 F (putative).
    
 0.981
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.978
KDM2A
Lysine demethylase 2A.
    
 0.968
KDM2B
Lysine demethylase 2B.
    
 0.968
CUL1
Cullin 1.
   
 0.906
ENSCPUP00000011075
annotation not available
    
 0.876
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.