STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMTC1Transmembrane O-mannosyltransferase targeting cadherins 1. (861 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.959
INTS13
Integrator complex subunit 13.
    
 0.892
INTS3
Integrator complex subunit 3.
    
 0.875
INTS10
Integrator complex subunit 10.
   
 0.862
INTS1
Integrator complex subunit 1.
    
 0.837
ENSCPUP00000006632
annotation not available
    
 0.837
AK9
Adenylate kinase 9.
   
 0.827
INTS9
Integrator complex subunit 9.
   
 0.820
INTS11
Integrator complex subunit 11.
  
 0.820
BAG3
BCL2 associated athanogene 3.
    
 0.793
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.