STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTNPleiotrophin. (164 aa)    
Predicted Functional Partners:
PTPRZ1
Protein tyrosine phosphatase receptor type Z1.
   
 0.911
LTK
Leukocyte receptor tyrosine kinase.
    
 0.827
ALK
ALK receptor tyrosine kinase.
    
 0.827
ROS1
ROS proto-oncogene 1, receptor tyrosine kinase.
    
 0.776
MET
MET proto-oncogene, receptor tyrosine kinase.
    
 0.775
MST1R
Macrophage stimulating 1 receptor.
    
 0.775
MDK
Midkine.
    
0.717
SDC3
Syndecan 3.
    
 
 0.676
PTPRB
Protein tyrosine phosphatase receptor type B.
   
 0.657
LOC106890484
Receptor-type tyrosine-protein phosphatase V-like.
   
 0.657
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.