STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106894310Ras-related protein Rab-39B-like. (219 aa)    
Predicted Functional Partners:
ENSCPUP00000006684
annotation not available
    
 0.884
LOC106897508
Intersectin-2-like.
    
 0.884
ENSCPUP00000000773
annotation not available
   
 0.853
ITSN1
Intersectin 1.
    
 0.815
C9orf72
C9orf72-SMCR8 complex subunit.
    
  0.756
GDI2
GDP dissociation inhibitor 2.
    
 0.752
CHM
CHM Rab escort protein.
    
 0.749
PTAR1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.726
SHANK3
SH3 and multiple ankyrin repeat domains 3.
   
 0.713
RABGGTB
Rab geranylgeranyltransferase subunit beta.
    
 0.691
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.