STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC6A8Solute carrier family 6 member 8. (610 aa)    
Predicted Functional Partners:
SLC6A2
Solute carrier family 6 member 2.
  
  
 
0.545
GAMT
Guanidinoacetate N-methyltransferase.
      
 0.545
SLC1A1
Solute carrier family 1 member 1.
    
 0.544
GATM
Glycine amidinotransferase.
      
 0.542
SLC1A2
Solute carrier family 1 member 2.
    
 0.538
TRMT11
tRNA methyltransferase 11 homolog.
      
 0.521
NINJ2
Ninjurin 2.
   
  
 0.444
SLC1A3
Solute carrier family 1 member 3.
    
 0.443
SLC1A6
Excitatory amino acid transporter 4-like.
    
 0.440
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.434
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.