STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPM1EProtein phosphatase, Mg2+/Mn2+ dependent 1E. (656 aa)    
Predicted Functional Partners:
MED31
Mediator complex subunit 31.
    
  0.751
MED7
Mediator complex subunit 7.
    
  0.741
MED21
Mediator complex subunit 21.
    
  0.741
MED14
Mediator complex subunit 14.
    
  0.741
MED6
Mediator complex subunit 6.
    
  0.706
MED17
Mediator complex subunit 17.
    
  0.661
TAB3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.621
TAB2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.621
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.605
BCKDHB
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.602
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.