STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000029583annotation not available (255 aa)    
Predicted Functional Partners:
ALDH18A1
Aldehyde dehydrogenase 18 family member A1.
  
 
 0.937
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
  0.914
GART
annotation not available
  
 
 0.887
LOC106885656
Trifunctional purine biosynthetic protein adenosine-3-like.
  
 
 0.887
ASMTL
Acetylserotonin O-methyltransferase like.
  
 
 0.884
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.878
ABAT
4-aminobutyrate aminotransferase.
  
 0.867
ALDH6A1
Aldehyde dehydrogenase 6 family member A1.
   
 0.866
EPHX2
Epoxide hydrolase 2.
  
 
 0.861
AGXT2
Alanine--glyoxylate aminotransferase 2.
  
 0.859
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.