STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (102 aa)    
Predicted Functional Partners:
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.999
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.999
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 0.999
LSM1
LSM1 homolog, mRNA degradation associated.
   
 0.999
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.999
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.999
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
LSM4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.999
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.