STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRRC2CProline rich coiled-coil 2C. (2701 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
    0.999
SON
SON DNA binding protein.
   
 
  0.999
BPTF
Bromodomain PHD finger transcription factor.
   
  
 0.811
ANKRD17
Ankyrin repeat domain 17.
   
 
 0.752
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
  0.715
AP3D1
Adaptor related protein complex 3 subunit delta 1.
   
 
  0.679
UBAP2
Ubiquitin associated protein 2.
   
 
 0.678
UBAP2L
Ubiquitin associated protein 2 like.
   
 
 0.678
BIRC6
Baculoviral IAP repeat containing 6.
   
    0.673
LOC106899836
E3 ubiquitin-protein ligase HUWE1-like.
   
    0.673
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.