STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001373495_00409Unannotated protein. (228 aa)    
Predicted Functional Partners:
GCA_001373495_00779
Unannotated protein.
  
 0.975
GCA_001373495_00408
Unannotated protein.
 
     0.958
GCA_001373495_03214
Unannotated protein.
  
  
  0.722
GCA_001373495_01828
Unannotated protein.
 
  
  0.696
GCA_001373495_01819
Unannotated protein.
  
  
  0.623
GCA_001373495_01073
Unannotated protein.
  
  
 
0.540
GCA_001373495_00410
Unannotated protein.
       0.532
GCA_001373495_01389
Unannotated protein.
  
 
  0.496
GCA_001373495_02727
Unannotated protein.
  
  
  0.478
GCA_001373495_00423
Unannotated protein.
  
  
 
0.470
Your Current Organism:
Arthrobacter koreensis
NCBI taxonomy Id: 199136
Other names: A. koreensis, Arthrobacter koreensis Lee et al. 2003, IFO 16787, JCM 12361, KCTC 9922, NBRC 16787, strain CA15-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.