STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN08917.1Hypothetical protein. (504 aa)    
Predicted Functional Partners:
SFN08941.1
FHA domain-containing protein.
 
     0.948
SFN09022.1
Serine/threonine-protein kinase PknG.
 
     0.943
SFN08964.1
Von Willebrand factor type A domain-containing protein.
 
     0.940
SFN08989.1
Serine/threonine protein phosphatase PrpC.
 
     0.940
SFN09047.1
Hypothetical protein.
       0.789
SFP02831.1
FHA domain-containing protein.
 
     0.783
SFN08889.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
       0.773
SFP02916.1
Serine/threonine-protein kinase PknG.
 
     0.759
SFP02856.1
Von Willebrand factor type A domain-containing protein.
 
     0.753
SFP00389.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
     0.678
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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