STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN16682.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
SFN16700.1
Hypothetical protein.
 
     0.954
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
 
     0.952
SFN16724.1
8-oxo-dGTP diphosphatase.
 
     0.830
SFN16635.1
Hypothetical protein.
 
     0.736
SFP58471.1
HEXXH motif-containing protein.
  
     0.661
SFN86519.1
Tetratricopeptide repeat-containing protein.
  
     0.642
SFN86592.1
Hypothetical protein.
  
     0.611
SFO65888.1
Hypothetical protein.
  
     0.567
SFP65097.1
Part of AAA domain-containing protein.
  
     0.558
SFP75171.1
DNA-binding transcriptional regulator, MarR family.
  
     0.543
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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