Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN23163.1 | SFN26537.1 | SAMN04489713_101798 | SAMN04489713_101918 | Chorismate mutase. | Prephenate dehydrogenase. | 0.861 |
SFN23163.1 | SFN32741.1 | SAMN04489713_101798 | SAMN04489713_1011172 | Chorismate mutase. | Prephenate dehydrogenase. | 0.861 |
SFN23163.1 | SFO45133.1 | SAMN04489713_101798 | SAMN04489713_106103 | Chorismate mutase. | Salicylate synthase. | 0.692 |
SFN23163.1 | SFO47565.1 | SAMN04489713_101798 | SAMN04489713_106220 | Chorismate mutase. | Anthranilate synthase, component I. | 0.908 |
SFN23163.1 | SFQ15767.1 | SAMN04489713_101798 | SAMN04489713_12331 | Chorismate mutase. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.830 |
SFN23163.1 | aroA | SAMN04489713_101798 | SAMN04489713_108255 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.951 |
SFN23163.1 | aroB | SAMN04489713_101798 | SAMN04489713_101757 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.791 |
SFN23163.1 | aroC | SAMN04489713_101798 | SAMN04489713_101755 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.968 |
SFN23163.1 | aroK | SAMN04489713_101798 | SAMN04489713_101756 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.886 |
SFN23163.1 | trpD | SAMN04489713_101798 | SAMN04489713_101605 | Chorismate mutase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.715 |
SFN26537.1 | SFN23163.1 | SAMN04489713_101918 | SAMN04489713_101798 | Prephenate dehydrogenase. | Chorismate mutase. | 0.861 |
SFN26537.1 | SFO45133.1 | SAMN04489713_101918 | SAMN04489713_106103 | Prephenate dehydrogenase. | Salicylate synthase. | 0.679 |
SFN26537.1 | SFO47565.1 | SAMN04489713_101918 | SAMN04489713_106220 | Prephenate dehydrogenase. | Anthranilate synthase, component I. | 0.863 |
SFN26537.1 | SFQ15767.1 | SAMN04489713_101918 | SAMN04489713_12331 | Prephenate dehydrogenase. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.631 |
SFN26537.1 | aroA | SAMN04489713_101918 | SAMN04489713_108255 | Prephenate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.975 |
SFN26537.1 | aroB | SAMN04489713_101918 | SAMN04489713_101757 | Prephenate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.866 |
SFN26537.1 | aroC | SAMN04489713_101918 | SAMN04489713_101755 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.971 |
SFN26537.1 | aroK | SAMN04489713_101918 | SAMN04489713_101756 | Prephenate dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.859 |
SFN26537.1 | trpD | SAMN04489713_101918 | SAMN04489713_101605 | Prephenate dehydrogenase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.756 |
SFN32741.1 | SFN23163.1 | SAMN04489713_1011172 | SAMN04489713_101798 | Prephenate dehydrogenase. | Chorismate mutase. | 0.861 |
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