STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN27159.1Glycolate oxidase. (459 aa)    
Predicted Functional Partners:
SFN13431.1
Glycolate oxidase iron-sulfur subunit.
 
  0.932
SFN13452.1
Glycolate oxidase FAD binding subunit.
  
  
 
0.757
SFN24218.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.722
SFN04635.1
Electron transfer flavoprotein beta subunit.
 
 
 0.719
SFN19142.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
    
  0.712
SFN45124.1
Right handed beta helix region.
    
  0.712
SFN04656.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 
 0.706
SFN27183.1
Clp amino terminal domain-containing protein, pathogenicity island component.
       0.693
SFN27218.1
Hypothetical protein.
       0.693
SFN13497.1
Malate synthase; Belongs to the malate synthase family.
  
 
 0.692
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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