STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN53879.1Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family. (824 aa)    
Predicted Functional Partners:
SFO32440.1
Carbohydrate binding module (family 35); Belongs to the glycosyl hydrolase 43 family.
 
  
  0.767
SFO45542.1
Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.695
SFO57080.1
Tagatose 6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.695
SFN65381.1
alpha-L-rhamnosidase.
 
 0.684
SFN58542.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.682
SFO44220.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.682
SFO19488.1
Hexosaminidase.
 
 0.678
SFP33779.1
alpha-L-rhamnosidase.
 
 0.674
SFO56019.1
alpha-L-rhamnosidase.
 
 0.673
SFP19521.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
 
 
 0.670
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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