Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN04759.1 | SFN18645.1 | SAMN04489713_10122 | SAMN04489713_101583 | Cysteine desulfurase. | Cysteine desulfurase. | 0.803 |
SFN04759.1 | SFN80561.1 | SAMN04489713_10122 | SAMN04489713_103100 | Cysteine desulfurase. | BFD-like [2Fe-2S] binding domain-containing protein. | 0.589 |
SFN04759.1 | SFP60367.1 | SAMN04489713_10122 | SAMN04489713_115197 | Cysteine desulfurase. | Hypothetical protein. | 0.925 |
SFN18645.1 | SFN04759.1 | SAMN04489713_101583 | SAMN04489713_10122 | Cysteine desulfurase. | Cysteine desulfurase. | 0.803 |
SFN18645.1 | SFN80561.1 | SAMN04489713_101583 | SAMN04489713_103100 | Cysteine desulfurase. | BFD-like [2Fe-2S] binding domain-containing protein. | 0.589 |
SFN18645.1 | SFO74014.1 | SAMN04489713_101583 | SAMN04489713_10971 | Cysteine desulfurase. | Cysteine desulfurase. | 0.812 |
SFN18645.1 | SFP60367.1 | SAMN04489713_101583 | SAMN04489713_115197 | Cysteine desulfurase. | Hypothetical protein. | 0.925 |
SFN24218.1 | SFN80561.1 | SAMN04489713_101839 | SAMN04489713_103100 | Glutamate synthase (NADPH/NADH) large chain. | BFD-like [2Fe-2S] binding domain-containing protein. | 0.892 |
SFN24218.1 | SFO92143.1 | SAMN04489713_101839 | SAMN04489713_110247 | Glutamate synthase (NADPH/NADH) large chain. | Respiratory nitrate reductase alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.752 |
SFN24218.1 | gcvP | SAMN04489713_101839 | SAMN04489713_106363 | Glutamate synthase (NADPH/NADH) large chain. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.968 |
SFN80529.1 | SFN80561.1 | SAMN04489713_10399 | SAMN04489713_103100 | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | BFD-like [2Fe-2S] binding domain-containing protein. | 0.982 |
SFN80561.1 | SFN04759.1 | SAMN04489713_103100 | SAMN04489713_10122 | BFD-like [2Fe-2S] binding domain-containing protein. | Cysteine desulfurase. | 0.589 |
SFN80561.1 | SFN18645.1 | SAMN04489713_103100 | SAMN04489713_101583 | BFD-like [2Fe-2S] binding domain-containing protein. | Cysteine desulfurase. | 0.589 |
SFN80561.1 | SFN24218.1 | SAMN04489713_103100 | SAMN04489713_101839 | BFD-like [2Fe-2S] binding domain-containing protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.892 |
SFN80561.1 | SFN80529.1 | SAMN04489713_103100 | SAMN04489713_10399 | BFD-like [2Fe-2S] binding domain-containing protein. | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | 0.982 |
SFN80561.1 | SFO66296.1 | SAMN04489713_103100 | SAMN04489713_108214 | BFD-like [2Fe-2S] binding domain-containing protein. | Bacterioferritin. | 0.956 |
SFN80561.1 | SFO74014.1 | SAMN04489713_103100 | SAMN04489713_10971 | BFD-like [2Fe-2S] binding domain-containing protein. | Cysteine desulfurase. | 0.589 |
SFN80561.1 | SFO92143.1 | SAMN04489713_103100 | SAMN04489713_110247 | BFD-like [2Fe-2S] binding domain-containing protein. | Respiratory nitrate reductase alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.618 |
SFN80561.1 | SFO92174.1 | SAMN04489713_103100 | SAMN04489713_110248 | BFD-like [2Fe-2S] binding domain-containing protein. | Respiratory nitrate reductase beta subunit. | 0.612 |
SFN80561.1 | SFP60367.1 | SAMN04489713_103100 | SAMN04489713_115197 | BFD-like [2Fe-2S] binding domain-containing protein. | Hypothetical protein. | 0.594 |
page 1 of 2