STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN89053.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (244 aa)    
Predicted Functional Partners:
SFN89145.1
Polysaccharide biosynthesis protein.
 
 0.978
SFN89188.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.976
SFN92249.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
 0.945
SFN89219.1
Hypothetical protein.
  
 
 0.942
SFN89085.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.922
SFN89116.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 0.911
SFO75925.1
Non-ribosomal peptide synthetase terminal domain of unknown function; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.877
SFP85509.1
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.857
SFN92494.1
N-acetylmannosaminyltransferase; Belongs to the glycosyltransferase 26 family.
  
 0.849
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.752
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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