STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN89254.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (220 aa)    
Predicted Functional Partners:
SFQ02925.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.864
SFN44556.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.833
SFQ39322.1
Hypothetical protein.
  
 0.833
SFN83413.1
Signal transduction histidine kinase.
  
  0.829
SFN95874.1
Signal transduction histidine kinase.
  
  0.828
SFP78210.1
Signal transduction histidine kinase.
  
  0.822
SFN80948.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.817
SFO94049.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.817
SFN13255.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.804
SFO49860.1
Signal transduction histidine kinase.
  
  0.801
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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