STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN94375.1Lipooligosaccharide transport system permease protein. (265 aa)    
Predicted Functional Partners:
SFN94415.1
Lipooligosaccharide transport system ATP-binding protein.
 
 
  0.977
SFQ15223.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.825
SFO50417.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.797
SFN79122.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.701
SFQ46501.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.692
SFN64515.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.688
SFN22050.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.665
SFQ11168.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.665
SFN21714.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.652
SFO74675.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.648
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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