STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO11017.1Cytochrome c-type biogenesis protein. (247 aa)    
Predicted Functional Partners:
SFO10963.1
Cytochrome c-type biogenesis protein CcsB.
 
  
 0.993
SFO11040.1
Thiol-disulfide isomerase or thioredoxin.
 
  
 0.993
SFO10991.1
Cytochrome c biogenesis protein.
 
  
 0.991
SFO11063.1
Broad specificity phosphatase PhoE.
  
    0.855
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.764
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.720
SFN19121.1
Cytochrome c oxidase subunit 3.
  
   
 0.688
SFO11347.1
uroporphyrinogen-III synthase.
  
    0.657
SFN19142.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
  
   
 0.609
SFO35819.1
Arsenite transporter, ACR3 family.
     
 0.593
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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