STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO17838.1Uncharacterized membrane protein. (186 aa)    
Predicted Functional Partners:
SFO17864.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.912
SFO49699.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.638
SFO49680.1
AraC-type DNA-binding protein.
 
     0.594
SFQ45035.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.589
SFQ45055.1
AraC-type DNA-binding protein.
 
     0.556
SFO17886.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.531
SFQ48341.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.504
SFP91681.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
  
     0.434
SFQ20491.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.431
SFN09418.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.413
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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