STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO23895.1Nitroimidazol reductase NimA, pyridoxamine 5'-phosphate oxidase superfamily. (147 aa)    
Predicted Functional Partners:
SFO50115.1
Hypothetical protein.
  
     0.663
SFO75639.1
SnoaL-like polyketide cyclase.
  
     0.623
SFN44785.1
Predicted ATP-dependent carboligase, ATP-grasp superfamily.
   
    0.538
SFO23874.1
Hypothetical protein.
       0.527
SFO59162.1
Probable F420-dependent oxidoreductase, Rv2161c family.
  
     0.527
SFN04854.1
Probable F420-dependent oxidoreductase, Rv2161c family.
  
     0.507
SFN27086.1
Probable F420-dependent oxidoreductase, MSMEG_2516 family.
  
     0.478
SFP89723.1
DNA-binding transcriptional regulator, MarR family.
  
     0.459
SFN19572.1
Signal transduction histidine kinase.
  
     0.454
SFN07480.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
    
  0.439
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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