STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO78210.1Serine phosphatase RsbU, regulator of sigma subunit. (542 aa)    
Predicted Functional Partners:
SFP55471.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.889
SFP09360.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.887
SFQ03220.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.887
SFP02742.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.875
SFN55532.1
Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
 
  0.806
SFQ39291.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.795
SFQ15456.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
  0.768
SFQ17994.1
Signal transduction histidine kinase.
 
 0.718
SFO66366.1
Stage II sporulation protein E (SpoIIE).
  
     0.714
SFN05159.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.689
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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