STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP04445.1Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (868 aa)    
Predicted Functional Partners:
SFP04476.1
Probable F420-dependent oxidoreductase, Rv2161c family.
    
  0.811
SFP04381.1
DUF35 OB-fold domain-containing protein, acyl-CoA-associated.
 
  
  0.785
SFP04412.1
Acetyl-CoA acetyltransferase.
    
  0.759
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.754
SFP04353.1
Polyketide cyclase / dehydrase and lipid transport.
       0.714
SFO45880.1
methylmalonyl-CoA mutase.
    
 0.642
SFO45901.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.642
SFP04504.1
Protocatechuate 3,4-dioxygenase beta subunit.
       0.642
SFP04532.1
Protocatechuate 3,4-dioxygenase alpha subunit.
       0.642
SFQ37819.1
8-amino-7-oxononanoate synthase.
   
 0.588
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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