STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP60231.1Hydrogenase nickel incorporation protein HypB. (252 aa)    
Predicted Functional Partners:
hypA
Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 0.997
SFP17732.1
Ni,Fe-hydrogenase III large subunit.
   
 
 0.988
SFP60785.1
Hydrogenase expression/formation protein HypD.
 
  
 0.975
SFP60752.1
Hydrogenase expression/formation protein HypC.
 
  
 0.970
SFO17631.1
Urease accessory protein.
  
 0.966
SFP60300.1
Hydrogenase small subunit.
 
  
 0.946
SFO17716.1
Urease subunit gamma; Belongs to the urease gamma subunit family.
 
 
 0.933
SFP60844.1
Hydrogenase maturation protein, carbamoyl dehydratase HypE.
 
  
 0.930
SFP60539.1
Hydrogenase maturation protease.
 
  
 0.900
SFO17685.1
Urease beta subunit.
  
 
 0.894
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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