Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN24218.1 | SFN51833.1 | SAMN04489713_101839 | SAMN04489713_102273 | Glutamate synthase (NADPH/NADH) large chain. | Aconitase. | 0.706 |
SFN24218.1 | SFO09615.1 | SAMN04489713_101839 | SAMN04489713_10481 | Glutamate synthase (NADPH/NADH) large chain. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.970 |
SFN24218.1 | SFP78876.1 | SAMN04489713_101839 | SAMN04489713_117175 | Glutamate synthase (NADPH/NADH) large chain. | Hypothetical protein. | 0.826 |
SFN24218.1 | SFQ18447.1 | SAMN04489713_101839 | SAMN04489713_123134 | Glutamate synthase (NADPH/NADH) large chain. | Aconitase. | 0.706 |
SFN24218.1 | mdh | SAMN04489713_101839 | SAMN04489713_1033 | Glutamate synthase (NADPH/NADH) large chain. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.964 |
SFN51833.1 | SFN24218.1 | SAMN04489713_102273 | SAMN04489713_101839 | Aconitase. | Glutamate synthase (NADPH/NADH) large chain. | 0.706 |
SFN51833.1 | SFO09615.1 | SAMN04489713_102273 | SAMN04489713_10481 | Aconitase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.833 |
SFN51833.1 | SFP78876.1 | SAMN04489713_102273 | SAMN04489713_117175 | Aconitase. | Hypothetical protein. | 0.491 |
SFN51833.1 | mdh | SAMN04489713_102273 | SAMN04489713_1033 | Aconitase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.696 |
SFO09615.1 | SFN24218.1 | SAMN04489713_10481 | SAMN04489713_101839 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Glutamate synthase (NADPH/NADH) large chain. | 0.970 |
SFO09615.1 | SFN51833.1 | SAMN04489713_10481 | SAMN04489713_102273 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Aconitase. | 0.833 |
SFO09615.1 | SFP78876.1 | SAMN04489713_10481 | SAMN04489713_117175 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Hypothetical protein. | 0.767 |
SFO09615.1 | SFQ18447.1 | SAMN04489713_10481 | SAMN04489713_123134 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Aconitase. | 0.833 |
SFO09615.1 | mdh | SAMN04489713_10481 | SAMN04489713_1033 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.977 |
SFP78876.1 | SFN24218.1 | SAMN04489713_117175 | SAMN04489713_101839 | Hypothetical protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.826 |
SFP78876.1 | SFN51833.1 | SAMN04489713_117175 | SAMN04489713_102273 | Hypothetical protein. | Aconitase. | 0.491 |
SFP78876.1 | SFO09615.1 | SAMN04489713_117175 | SAMN04489713_10481 | Hypothetical protein. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.767 |
SFP78876.1 | SFQ18447.1 | SAMN04489713_117175 | SAMN04489713_123134 | Hypothetical protein. | Aconitase. | 0.491 |
SFP78876.1 | cpdA | SAMN04489713_117175 | SAMN04489713_117176 | Hypothetical protein. | Calcineurin-like phosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.457 |
SFP78876.1 | infA | SAMN04489713_117175 | SAMN04489713_117174 | Hypothetical protein. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.447 |
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