STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP96203.1Long-chain acyl-CoA synthetase. (612 aa)    
Predicted Functional Partners:
SFO58652.1
Methyltransferase domain-containing protein.
  
 0.908
SFQ37819.1
8-amino-7-oxononanoate synthase.
  
0.902
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.859
SFO75517.1
[acyl-carrier-protein] S-malonyltransferase.
   
 0.852
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.801
SFN29359.1
Acyl-CoA dehydrogenase.
  
  0.786
SFO46533.1
Acyl-CoA dehydrogenase.
  
  0.786
SFO57429.1
Hypothetical protein.
  
  0.786
SFP90198.1
Hypothetical protein.
  
  0.786
SFQ00200.1
Acyl-CoA dehydrogenase.
  
  0.784
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.