STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ05883.1DNA-binding transcriptional regulator, MarR family. (157 aa)    
Predicted Functional Partners:
SFP20057.1
FtsX-like permease family protein.
 
     0.631
SFQ05901.1
Tautomerase enzyme.
       0.608
SFQ26335.1
Hypothetical protein.
  
     0.571
SFO48264.1
Ketosteroid isomerase-related protein.
  
     0.543
SFO66505.1
Hypothetical protein.
  
     0.541
SFO48244.1
Ketosteroid isomerase-related protein.
  
     0.512
SFO43812.1
Hypothetical protein.
  
     0.496
SFO33141.1
Type VII secretion protein EccB.
  
     0.491
SFO33168.1
Type VII secretion integral membrane protein EccD.
  
     0.481
SFO33021.1
Hypothetical protein.
  
     0.442
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.