STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ41261.1Hypothetical protein. (517 aa)    
Predicted Functional Partners:
SFQ41243.1
Hypothetical protein.
 
   
 0.962
SFQ41223.1
Hypothetical protein.
 
     0.917
SFQ41286.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
  
 0.814
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.593
SFQ39924.1
Protein of unknown function.
 
     0.588
SFN19639.1
Hypothetical protein.
   
    0.552
SFP87572.1
Cation-transporting ATPase F.
   
    0.514
SFN95753.1
Pilus assembly protein CpaF.
    
 0.475
SFN79943.1
Pilus assembly protein, ATPase of CpaF family.
    
 0.475
SFQ03569.1
Pilus assembly protein CpaF.
    
 0.475
Your Current Organism:
Actinomadura madurae
NCBI taxonomy Id: 1993
Other names: A. madurae, ATCC 19425, CCM 136, CCUG 32944, CECT 3043, CIP 105487, DSM 43067, IAM 14277, IFM 0585, IFO 13909, IFO 14623, IMET 9585, JCM 7436, KCTC 9192, NBRC 14623, NCIMB 13469, NCTC 5654, NRRL B-3843, Nocardia madurae, Streptomyces madurae, Streptothrix madurae, VKM Ac-809
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