STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hofCProtein transport protein hofC; Escherichia coli K-12 ortholog: b0106; Escherichia coli O157:H7 ortholog: z0116. (400 aa)    
Predicted Functional Partners:
hofB
Protein transport protein hofB; Escherichia coli K-12 ortholog: b0107; Escherichia coli O157:H7 ortholog: z0117.
 
 
 0.997
ppdD
Prepilin peptidase dependent protein D precursor; Escherichia coli K-12 ortholog: b0108; Escherichia coli O157:H7 ortholog: z0118.
 
   
 0.945
yheG
Probable general secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.944
hofQ
Protein transport protein hofQ precursor; Escherichia coli K-12 ortholog: b3391; Escherichia coli O157:H7 ortholog: z4744.
 
 
 
 0.923
hofG
Putative general secretion pathway protein G precursor; Protein transport protein hofG; Escherichia coli K-12 ortholog: b3328.
 
  
 0.884
hofH
Putative general secretion pathway protein H precursor; Protein transport protein hofH; Escherichia coli K-12 ortholog: b3329.
  
  
 0.848
hofD
Type 4 prepilin-like proteins leader peptide processing enzyme; Escherichia coli K-12 ortholog: b3335; Escherichia coli O157:H7 ortholog: z4693; bifunctional; Leader peptidase; N-methyltransferase; Belongs to the peptidase A24 family.
 
  
 0.834
yggR
Hypothetical protein yggR; Escherichia coli K-12 ortholog: b2950; Escherichia coli O157:H7 ortholog: z4295.
 
  
 0.822
pshM
Putative general secretion pathway protein M; Transport protein pshM; Escherichia coli K-12 ortholog: b3334.
  
  
 0.705
ycaI
Hypothetical protein ycaI; Escherichia coli K-12 ortholog: b0913; Escherichia coli O157:H7 ortholog: z1259.
  
  
 0.702
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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