STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadGHypothetical ABC transporter ATP-binding protein yadG; Escherichia coli K-12 ortholog: b0127; Escherichia coli O157:H7 ortholog: z0138. (308 aa)    
Predicted Functional Partners:
yadH
Hypothetical protein yadH; Escherichia coli K-12 ortholog: b0128; Escherichia coli O157:H7 ortholog: z0139.
  
 0.990
ybhS
Hypothetical protein ybhS; Part of the ABC transporter complex YbhFSR that could be involved in efflux of cefoperazone. Probably involved in the translocation of the substrate across the membrane.
 
  
 0.593
c1016
Hypothetical protein; Residues 1 to 114 of 114 are 99.12 pct identical to residues 535 to 648 of 648 from GenPept.129 : >gb|AAG55261.1|AE005269_5 (AE005269) putative ATP-binding component of a transport system [Escherichia coli O157:H7 EDL933].
 
  
 0.592
yadF
Protein yadF; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.561
yadI
Putative PTS system IIA component yadI; Escherichia coli K-12 ortholog: b0129; Escherichia coli O157:H7 ortholog: z0140.
       0.535
gshA
Glutamate--cysteine ligase; Escherichia coli K-12 ortholog: b2688; Escherichia coli O157:H7 ortholog: z3989; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
     0.460
yadE
Hypothetical protein yadE precursor; Escherichia coli K-12 ortholog: b0130; Escherichia coli O157:H7 ortholog: z0141.
     
 0.431
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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