STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaMHypothetical protein ybaM; Escherichia coli K-12 ortholog: b0466; Escherichia coli O157:H7 ortholog: z0583. (53 aa)    
Predicted Functional Partners:
priC
Primosomal replication protein N; Escherichia coli K-12 ortholog: b0467; Escherichia coli O157:H7 ortholog: z0584.
     
 0.842
ybaN
Hypothetical protein ybaN; Escherichia coli K-12 ortholog: b0468; Escherichia coli O157:H7 ortholog: z0585.
       0.588
yhgE
Hypothetical protein yhgE; Escherichia coli K-12 ortholog: b3402; Escherichia coli O157:H7 ortholog: z4756.
  
     0.521
yfeZ
Hypothetical protein yfeZ; Escherichia coli K-12 ortholog: b2433; Escherichia coli O157:H7 ortholog: z3698.
  
     0.501
yecA
Hypothetical protein yecA; Escherichia coli K-12 ortholog: b1908; Escherichia coli O157:H7 ortholog: z2964; Belongs to the UPF0149 family.
  
     0.496
c1468
Hypothetical protein; Residues 4 to 248 of 687 are 29.38 pct identical to residues 196 to 438 of 973 from GenPept.129 : >gb|AAG56007.1|AE005333_4 (AE005333) putative membrane protein of prophage CP-933X [Escherichia coli O157:H7 EDL933].
  
     0.492
yncE
Hypothetical protein yncE precursor; Escherichia coli K-12 ortholog: b1452; Escherichia coli O157:H7 ortholog: z2267.
  
     0.486
yebU
Hypothetical protein yebU; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
  
   
 0.483
ybjX
Hypothetical protein ybjX; Escherichia coli K-12 ortholog: b0877; Escherichia coli O157:H7 ortholog: z1112.
  
     0.468
hyaE
Hydrogenase-1 operon protein hyaE; Escherichia coli K-12 ortholog: b0976; Escherichia coli O157:H7 ortholog: z1393.
  
   
 0.468
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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