STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbAHypothetical ABC transporter ATP-binding protein ybbA; Escherichia coli K-12 ortholog: b0495; Escherichia coli O157:H7 ortholog: z0648. (228 aa)    
Predicted Functional Partners:
c1016
Hypothetical protein; Residues 1 to 114 of 114 are 99.12 pct identical to residues 535 to 648 of 648 from GenPept.129 : >gb|AAG55261.1|AE005269_5 (AE005269) putative ATP-binding component of a transport system [Escherichia coli O157:H7 EDL933].
     0.934
ybbP
Hypothetical protein ybbP; Escherichia coli K-12 ortholog: b0496; Escherichia coli O157:H7 ortholog: z0649.
 
     0.852
tesA
Acyl-CoA thioesterase I precursor; TesA is a multifunctional esterase that can act as a thioesterase, arylesterase, lysophospholipase and protease.
 
     0.776
ygjD
Probable O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
     0.619
ybbO
Hypothetical oxidoreductase ybbO; Escherichia coli K-12 ortholog: b0493; Escherichia coli O157:H7 ortholog: z0646; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.581
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome (By similarity); Belongs to the universal ribosomal protein uS11 family.
  
     0.581
ybeW
Chaperone protein hscC; Hsc62; Escherichia coli K-12 ortholog: b0650; Escherichia coli O157:H7 ortholog: z0800; Belongs to the heat shock protein 70 family.
  
     0.561
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
     0.534
ybbN
Hypothetical protein ybbN; Escherichia coli K-12 ortholog: b0492; Escherichia coli O157:H7 ortholog: z0645.
       0.523
dnaK
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
     0.519
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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