STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abrBAbrB protein; AidB regulator; Escherichia coli K-12 ortholog: b0715; Escherichia coli O157:H7 ortholog: z0867. (363 aa)    
Predicted Functional Partners:
yefM
Hypothetical protein yefM; Antitoxin component of a type II toxin-antitoxin (TA) system. Antitoxin that counteracts the effect of the YoeB mRNA interferase. YefM binds to the promoter region of the yefM-yeoB operon to repress transcription, YeoB acts as a corepressor (By similarity).
      
 0.651
c1138
Hypothetical protein; Residues 21 to 84 of 84 are 96.87 pct identical to residues 350 to 413 of 413 from GenPept.129 : >gb|AAG55550.1|AE005294_5 (AE005294) periplasmic glucose-1-phosphatase [Escherichia coli O157:H7 EDL933].
  
     0.625
agp
Glucose-1-phosphatase precursor; Escherichia coli K-12 ortholog: b1002; Escherichia coli O157:H7 ortholog: z1421.
  
     0.585
hipB
Protein hipB; Antitoxin component of a type II type II toxin-antitoxin (TA) system. Neutralizes the toxic effect of cognate toxin HipA. Represses the hipBA operon promoter (By similarity).
      
 0.563
c4775
Hypothetical protein; Residues 52 to 165 of 169 are 31.66 pct identical to residues 28 to 144 of 147 from GenPept.129 : >gb|AAL94188.1| (AE010513) unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586].
 
    0.535
yddM
Hypothetical protein yddM; Escherichia coli K-12 ortholog: b1477; Escherichia coli O157:H7 ortholog: z2233; Belongs to the VapA/VapI family.
      
 0.505
ydhK
Hypothetical protein ydhK; Escherichia coli K-12 ortholog: b1645; Escherichia coli O157:H7 ortholog: z2660.
  
     0.437
ynfM
Hypothetical transport protein ynfM; Escherichia coli K-12 ortholog: b1596; Escherichia coli O157:H7 ortholog: z2590.
  
   
 0.434
c0795
Putative conserved protein; Residues 1 to 80 of 80 are 94.99 pct identical to residues 239 to 318 of 362 from MG1655 : b0716.
       0.427
ygiY
Sensor protein qseC; Escherichia coli K-12 ortholog: b3026; Escherichia coli O157:H7 ortholog: z4378.
  
     0.405
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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