STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c1246Hypothetical protein; Residues 21 to 238 of 246 are 27.35 pct identical to residues 12 to 226 of 232 from GenPept.129 : >emb|CAC93018.1| (AJ414153) conserved hypothetical protein [Yersinia pestis]. (246 aa)    
Predicted Functional Partners:
yciR
Hypothetical protein yciR; Escherichia coli K-12 ortholog: b1285; Escherichia coli O157:H7 ortholog: z2516.
  
  
 0.948
ycgR
Hypothetical protein ycgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
     
 0.932
yhjH
Hypothetical protein yhjH; Escherichia coli K-12 ortholog: b3525; Escherichia coli O157:H7 ortholog: z4939.
  
  
0.919
yoaD
Hypothetical protein yoaD; Escherichia coli K-12 ortholog: b1815; Escherichia coli O157:H7 ortholog: z2858.
  
   
 0.545
yhjK
Protein yhjK; Escherichia coli K-12 ortholog: b3529; Escherichia coli O157:H7 ortholog: z4943.
  
   
 0.537
yhdA
Hypothetical protein yhdA; Escherichia coli K-12 ortholog: b3252; Escherichia coli O157:H7 ortholog: z4611.
  
   
 0.521
c1610
Conserved hypothetical protein; Escherichia coli O157:H7 ortholog: z0403.
  
   
 0.500
ylaB
Hypothetical protein ylaB; Escherichia coli K-12 ortholog: b0457; Escherichia coli O157:H7 ortholog: z0569.
  
   
 0.490
focX
Putative Regulatory protein; Residues 18 to 183 of 183 are 100.00 pct identical to residues 1 to 166 of 166 from SwissProt.40 : >sp|P42192|PRSX_ECOLI PRSX PROTEIN.
       0.478
yjcC
Hypothetical protein yjcC; Escherichia coli K-12 ortholog: b4061; Escherichia coli O157:H7 ortholog: z5660.
  
   
 0.477
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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