Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
c1367 | c1368 | c1367 | c1368 | Hypothetical protein. | Hypothetical protein. | 0.773 |
c1367 | fabF | c1367 | c1365 | Hypothetical protein. | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.496 |
c1367 | holB | c1367 | c1371 | Hypothetical protein. | DNA polymerase III, delta' subunit; Escherichia coli K-12 ortholog: b1099; Escherichia coli O157:H7 ortholog: z1738. | 0.554 |
c1367 | pabC | c1367 | c1366 | Hypothetical protein. | 4-amino-4-deoxychorismate lyase; Escherichia coli K-12 ortholog: b1096; Escherichia coli O157:H7 ortholog: z1735. | 0.762 |
c1367 | tmk | c1367 | c1370 | Hypothetical protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.554 |
c1367 | yceG | c1367 | c1369 | Hypothetical protein. | Hypothetical protein yceG; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.554 |
c1367 | ycfH | c1367 | c1372 | Hypothetical protein. | Putative deoxyribonuclease ycfH; Escherichia coli K-12 ortholog: b1100; Escherichia coli O157:H7 ortholog: z1739. | 0.554 |
c1368 | c1367 | c1368 | c1367 | Hypothetical protein. | Hypothetical protein. | 0.773 |
c1368 | fabF | c1368 | c1365 | Hypothetical protein. | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.496 |
c1368 | holB | c1368 | c1371 | Hypothetical protein. | DNA polymerase III, delta' subunit; Escherichia coli K-12 ortholog: b1099; Escherichia coli O157:H7 ortholog: z1738. | 0.554 |
c1368 | pabC | c1368 | c1366 | Hypothetical protein. | 4-amino-4-deoxychorismate lyase; Escherichia coli K-12 ortholog: b1096; Escherichia coli O157:H7 ortholog: z1735. | 0.762 |
c1368 | tmk | c1368 | c1370 | Hypothetical protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.554 |
c1368 | yceG | c1368 | c1369 | Hypothetical protein. | Hypothetical protein yceG; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.554 |
c1368 | ycfH | c1368 | c1372 | Hypothetical protein. | Putative deoxyribonuclease ycfH; Escherichia coli K-12 ortholog: b1100; Escherichia coli O157:H7 ortholog: z1739. | 0.554 |
fabF | c1367 | c1365 | c1367 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Hypothetical protein. | 0.496 |
fabF | c1368 | c1365 | c1368 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Hypothetical protein. | 0.496 |
fabF | holB | c1365 | c1371 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | DNA polymerase III, delta' subunit; Escherichia coli K-12 ortholog: b1099; Escherichia coli O157:H7 ortholog: z1738. | 0.422 |
fabF | pabC | c1365 | c1366 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 4-amino-4-deoxychorismate lyase; Escherichia coli K-12 ortholog: b1096; Escherichia coli O157:H7 ortholog: z1735. | 0.591 |
fabF | tmk | c1365 | c1370 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.452 |
fabF | yceG | c1365 | c1369 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Hypothetical protein yceG; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.406 |
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