STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfDHypothetical protein ydfD; Escherichia coli K-12 ortholog: b1576; Escherichia coli O157:H7 ortholog: z6079. (66 aa)    
Predicted Functional Partners:
dicB
Division inhibition protein dicB; Escherichia coli K-12 ortholog: b1575; Escherichia coli O157:H7 ortholog: z6078.
  
  
 0.719
ydfB
Hypothetical protein ydfB; Escherichia coli K-12 ortholog: b1572; Escherichia coli O157:H7 ortholog: z1330.
      
 0.682
ydfA
Hypothetical protein ydfA; Escherichia coli K-12 ortholog: b1571; Escherichia coli O157:H7 ortholog: z2089.
      
 0.682
ydfC
Hypothetical protein ydfC; Escherichia coli K-12 ortholog: b1573; Escherichia coli O157:H7 ortholog: z6076.
      
 0.681
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.