STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c1439Hypothetical protein; Residues 1 to 185 of 186 are 74.59 pct identical to residues 1 to 183 of 184 from GenPept.129 : >gb|AAA82105.1| (L40418) alternate start at bp 59; ORF [Bacteriophage phi-80]. (186 aa)    
Predicted Functional Partners:
c1436
Probable lysozyme from lambdoid prophage Qin; Escherichia coli K-12 ortholog: b1554; Escherichia coli O157:H7 ortholog: z1796.
 
     0.538
iutA
IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp|P14542|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).
  
     0.528
c1880
Putative conserved protein; Residues 1 to 109 of 109 are 90.82 pct identical to residues 97 to 205 of 205 from MG1655 : b1454.
  
     0.485
c1437
Putative Rz endopeptidase from lambdoid prophage DLP12; Escherichia coli K-12 ortholog: b0556; Escherichia coli O157:H7 ortholog: z0961.
       0.463
c1438
Hypothetical protein; Residues 1 to 50 of 50 are 92.00 pct identical to residues 1 to 50 of 50 from GenPept.129 : >dbj|BAB34245.1| (AP002553) hypothetical protein [Escherichia coli O157:H7].
       0.463
c3188
Hypothetical protein; Residues 1 to 265 of 265 are 88.84 pct identical to residues 1 to 269 of 269 from GenPept.129 : >gb|AAL89446.1| (U82619) unknown [Shigella flexneri bacteriophage V].
 
     0.453
c4518
Conserved hypothetical protein; Residues 30 to 145 of 145 are 97.41 pct identical to residues 1 to 116 of 348 from GenPept.129 : >gb|AAG55755.1|AE005312_1 (AE005312) Z1640 gene product [Escherichia coli O157:H7 EDL933].
  
    0.449
yhbE
Hypothetical transport protein yhbE; Escherichia coli K-12 ortholog: b3184; Escherichia coli O157:H7 ortholog: z4546.
  
     0.429
c3242
Hypothetical protein.
  
     0.427
c1460
Putative tail component of prophage; Escherichia coli O157:H7 ortholog: z2140.
 
    0.417
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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