STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c1555Putative DNA N-6-adenine-methyltransferase of bacteriophage; Escherichia coli O157:H7 ortholog: z1454. (185 aa)    
Predicted Functional Partners:
ninB
Unknown protein encoded within prophage; Escherichia coli O157:H7 ortholog: z3351; Belongs to the ninB family.
 
     0.833
c4498
IS1 protein InsB; Escherichia coli O157:H7 ortholog: z1632.
  
     0.709
c0396
Insertion element IS1 1/2/3/5/6 protein insA; IS1a/IS1b/IS1c/IS1d; Escherichia coli K-12 ortholog: b3444.
  
     0.660
c3204
Hypothetical protein; Residues 12 to 376 of 390 are 31.39 pct identical to residues 4 to 373 of 389 from GenPept.129 : >gb|AAG09988.1|AF251497_6 (AF251497) integrase [Cloning vector HKBS1]; Belongs to the 'phage' integrase family.
  
  
 0.627
c0363
Putative RTX family exoprotein A gene; Residues 83 to 1160 of 1610 are 23.56 pct identical to residues 3030 to 4053 of 4106 from GenPept.129 : >emb|CAD18331.1| (AL646083) PUTATIVE HEMAGGLUTININ/HEMOLYSIN-RELATED PROTEIN [Ralstonia solanacearum].
  
   
 0.588
c4503
Insertion element IS1 1/2/3/5/6 protein insA; IS1a/IS1b/IS1c/IS1d; Escherichia coli K-12 ortholog: b3444.
  
     0.588
ychN
Hypothetical protein ychN; Escherichia coli K-12 ortholog: b1219; Escherichia coli O157:H7 ortholog: z1994.
  
     0.580
c3240
Hypothetical protein; Residues 6 to 115 of 118 are 38.18 pct identical to residues 4 to 111 of 210 from GenPept.129 : >gb|AAF12618.1|AE001826_87 (AE001826) hypothetical protein [Deinococcus radiodurans].
  
     0.573
c1552
Unknown protein of IS629 encoded within prophage; Escherichia coli O157:H7 ortholog: z2982.
       0.551
c1553
Putative Transposase for IS629; Escherichia coli O157:H7 ortholog: z3297.
       0.551
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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