STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rusCrossover junction endodeoxyribonuclease rusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of CC dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC (By similarity); Belongs to the RusA family. (120 aa)    
Predicted Functional Partners:
c1423
Hypothetical protein ydfU; Escherichia coli K-12 ortholog: b1560; Escherichia coli O157:H7 ortholog: z3116.
     
 0.800
c1558
Hypothetical protein; Residues 1 to 46 of 46 are 95.65 pct identical to residues 1 to 46 of 46 from SwissProt.40 : >sp|Q47272|YLCG_ECOLI Hypothetical protein ylcG in lambdoid DLP12 prophage region.
       0.784
c3664
Hypothetical protein yeeR; Escherichia coli K-12 ortholog: b2001.
  
     0.717
c1274
Hypothetical protein yeeR; Escherichia coli K-12 ortholog: b2001.
  
     0.715
yciQ
Hypothetical protein yciQ; Escherichia coli K-12 ortholog: b1268.
  
    0.707
yfaL
Hypothetical protein yfaL precursor; Escherichia coli K-12 ortholog: b2233; Escherichia coli O157:H7 ortholog: z3487.
  
     0.695
yihF
Hypothetical protein yihF; Escherichia coli K-12 ortholog: b3861; Escherichia coli O157:H7 ortholog: z5393.
  
     0.691
yheD
Probable general secretion pathway protein A; Escherichia coli K-12 ortholog: b3323.
  
     0.690
yheK
Probable general secretion pathway protein L; Escherichia coli K-12 ortholog: b3333; Escherichia coli O157:H7 ortholog: z2633.
  
     0.689
yddB
Hypothetical protein yddB; CDS103; Escherichia coli K-12 ortholog: b1495; Escherichia coli O157:H7 ortholog: z2213.
  
     0.681
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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