STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c1577Putative head-tail joining protein of prophage; Escherichia coli O157:H7 ortholog: z1890. (124 aa)    
Predicted Functional Partners:
c1575
Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z1888; Belongs to the lambda phage major capsid protein family.
  
    0.846
c1578
Putative tail fiber component Z of prophage; Escherichia coli O157:H7 ortholog: z3089.
  
    0.777
c1576
Hypothetical protein; Residues 17 to 140 of 140 are 100.00 pct identical to residues 1 to 124 of 124 from SwissProt.40 : >sp|P36276|YG78_BPP21 Hypothetical 13.5 kDa protein in GP7-GP8 intergenic region.
       0.773
c1579
Putative tail component of prophage; Escherichia coli O157:H7 ortholog: z1893.
  
    0.773
c1580
Tail protein; Residues 1 to 53 of 54 are 96.22 pct identical to residues 1 to 53 of 256 from GenPept.129 : >gb|AAG55990.1|AE005331_3 (AE005331) putative tail component of prophage CP-933X [Escherichia coli O157:H7 EDL933].
  
    0.773
c1574
Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z2360.
  
    0.675
c1445
Putative DNA packaging protein of prophage; Escherichia coli O157:H7 ortholog: z2364.
   
  
 0.637
c1569
Putative DNA packaging protein of prophage; Escherichia coli O157:H7 ortholog: z2364.
   
  
 0.637
potB
Spermidine/putrescine transport system permease protein potB; Escherichia coli K-12 ortholog: b1125; Escherichia coli O157:H7 ortholog: z1830.
      
 0.493
c1573
Hypothetical protein.
       0.451
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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