STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydiHHypothetical protein ydiH; Escherichia coli K-12 ortholog: b1685; Escherichia coli O157:H7 ortholog: z2713. (89 aa)    
Predicted Functional Partners:
ydiI
Hypothetical protein ydiI; Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA).
       0.733
ydiJ
Hypothetical protein ydiJ; Escherichia coli K-12 ortholog: b1687; Escherichia coli O157:H7 ortholog: z2715.
       0.733
ydiK
Hypothetical protein ydiK; Escherichia coli K-12 ortholog: b1688; Escherichia coli O157:H7 ortholog: z2716.
       0.459
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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