STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecFHypothetical protein yecF; Escherichia coli K-12 ortholog: b1915; Escherichia coli O157:H7 ortholog: z3003. (74 aa)    
Predicted Functional Partners:
ompX
Outer membrane protein X precursor; Escherichia coli K-12 ortholog: b0814; Escherichia coli O157:H7 ortholog: z1036.
  
     0.774
lomP
Putative Lom-like outer membrane protein of prophage; Escherichia coli O157:H7 ortholog: z6028.
  
     0.774
ydgH
Protein ydgH precursor; Escherichia coli K-12 ortholog: b1604; Escherichia coli O157:H7 ortholog: z2603.
  
     0.774
yejG
Hypothetical protein yejG; Escherichia coli K-12 ortholog: b2181; Escherichia coli O157:H7 ortholog: z3440.
  
     0.774
c3153
Putative outer membrane protein of prophage; Escherichia coli O157:H7 ortholog: z1917.
  
     0.774
holE
DNA polymerase III, theta subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity).
  
     0.773
yjeI
Hypothetical protein yjeI precursor; Escherichia coli K-12 ortholog: b4144; Escherichia coli O157:H7 ortholog: z5749.
  
     0.773
ydgT
Hypothetical protein ydgT; Modifies the set of genes regulated by H-NS; Hha and cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA. The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC; Belongs to the Hha/YmoA/Cnu family.
  
     0.772
yiiQ
Hypothetical protein yiiQ precursor; Escherichia coli K-12 ortholog: b3920; Escherichia coli O157:H7 ortholog: z5465.
  
     0.772
yciC
Hypothetical protein yciC; Escherichia coli K-12 ortholog: b1255; Escherichia coli O157:H7 ortholog: z2033.
  
     0.771
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.