STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfaWHypothetical protein yfaW; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR). (405 aa)    
Predicted Functional Partners:
yfaU
Hypothetical protein yfaU; Catalyzes the reversible retro-aldol cleavage of 2-keto-3- deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde. Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily.
 
 
 0.986
yfaV
Hypothetical transport protein yfaV; Escherichia coli K-12 ortholog: b2246; Escherichia coli O157:H7 ortholog: z3504.
 
  
 0.957
yfaX
Hypothetical transcriptional regulator yfaX; Escherichia coli K-12 ortholog: b2248; Escherichia coli O157:H7 ortholog: z3506.
     
 0.911
ygcX
Glucarate dehydratase; Escherichia coli K-12 ortholog: b2787; Escherichia coli O157:H7 ortholog: z4102; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
   
 0.747
rhaR
L-rhamnose operon transcriptional activator rhaR; Activates expression of the rhaSR operon in response to L- rhamnose.
      
 0.680
yiiL
Hypothetical protein yiiL; Involved in the anomeric conversion of L-rhamnose.
     
 0.675
rhaA
L-rhamnose isomerase; Escherichia coli K-12 ortholog: b3903; Escherichia coli O157:H7 ortholog: z5447.
      
 0.574
c2791
CinA-like protein; Escherichia coli K-12 ortholog: b2249; Escherichia coli O157:H7 ortholog: z3507; Belongs to the CinA family.
       0.435
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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