Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
c2913 | ddg | c2913 | c2915 | Hypothetical protein. | DDG protein; Catalyzes the transfer of palmitoleate from palmitoleoyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (palmitoleoyl)-lipid IV(A); Belongs to the LpxL/LpxM/LpxP family. LpxP subfamily. | 0.417 |
c2913 | yfdY | c2913 | c2914 | Hypothetical protein. | Hypothetical protein yfdY; Escherichia coli K-12 ortholog: b2377; Escherichia coli O157:H7 ortholog: z3642. | 0.773 |
ddg | c2913 | c2915 | c2913 | DDG protein; Catalyzes the transfer of palmitoleate from palmitoleoyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (palmitoleoyl)-lipid IV(A); Belongs to the LpxL/LpxM/LpxP family. LpxP subfamily. | Hypothetical protein. | 0.417 |
ddg | yfdY | c2915 | c2914 | DDG protein; Catalyzes the transfer of palmitoleate from palmitoleoyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (palmitoleoyl)-lipid IV(A); Belongs to the LpxL/LpxM/LpxP family. LpxP subfamily. | Hypothetical protein yfdY; Escherichia coli K-12 ortholog: b2377; Escherichia coli O157:H7 ortholog: z3642. | 0.417 |
ydcZ | yfdY | c1872 | c2914 | Hypothetical protein ydcZ; Escherichia coli K-12 ortholog: b1447; Escherichia coli O157:H7 ortholog: z2272. | Hypothetical protein yfdY; Escherichia coli K-12 ortholog: b2377; Escherichia coli O157:H7 ortholog: z3642. | 0.586 |
yfdY | c2913 | c2914 | c2913 | Hypothetical protein yfdY; Escherichia coli K-12 ortholog: b2377; Escherichia coli O157:H7 ortholog: z3642. | Hypothetical protein. | 0.773 |
yfdY | ddg | c2914 | c2915 | Hypothetical protein yfdY; Escherichia coli K-12 ortholog: b2377; Escherichia coli O157:H7 ortholog: z3642. | DDG protein; Catalyzes the transfer of palmitoleate from palmitoleoyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (palmitoleoyl)-lipid IV(A); Belongs to the LpxL/LpxM/LpxP family. LpxP subfamily. | 0.417 |
yfdY | ydcZ | c2914 | c1872 | Hypothetical protein yfdY; Escherichia coli K-12 ortholog: b2377; Escherichia coli O157:H7 ortholog: z3642. | Hypothetical protein ydcZ; Escherichia coli K-12 ortholog: b1447; Escherichia coli O157:H7 ortholog: z2272. | 0.586 |