STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiBPutative lipoprotein yfiB precursor; Escherichia coli K-12 ortholog: b2605; Escherichia coli O157:H7 ortholog: z3899. (160 aa)    
Predicted Functional Partners:
yfiR
Hypothetical protein yfiR precursor; Escherichia coli K-12 ortholog: b2603; Escherichia coli O157:H7 ortholog: z3897.
 
  
 0.978
yfiN
Hypothetical protein yfiN; Escherichia coli K-12 ortholog: b2604; Escherichia coli O157:H7 ortholog: z3898.
  
  
 0.971
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. TolB occupies a key intermediary position in the Tol-Pal system because it communicates directly with both membrane-embedded components, Pal in the outer membrane and TolA in the inner membrane.
  
 
 0.707
ompA
Outer membrane protein II*; Escherichia coli K-12 ortholog: b0957; Escherichia coli O157:H7 ortholog: z1307; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.653
ydbK
Probable pyruvate-flavodoxin oxidoreductase; Escherichia coli K-12 ortholog: b1378; Escherichia coli O157:H7 ortholog: z2332.
  
 
 0.651
pal
Peptidoglycan-associated lipoprotein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   
 0.567
yhjH
Hypothetical protein yhjH; Escherichia coli K-12 ortholog: b3525; Escherichia coli O157:H7 ortholog: z4939.
      
 0.516
yfiL
Hypothetical protein yfiL; URF2; Escherichia coli K-12 ortholog: b2602; Escherichia coli O157:H7 ortholog: z3895.
       0.456
dniR
Membrane-bound lytic murein transglycosylase D precursor; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity); Belongs to the transglycosylase Slt family.
 
 
 0.454
hlpA
Histone-like protein HLP-1 precursor; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm.
  
 
 0.427
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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