STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c3169Putative head-DNA stabilization protein of prophage; Escherichia coli O157:H7 ortholog: z1887. (112 aa)    
Predicted Functional Partners:
c3170
Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z1886.
  
  
 0.830
c3173
Putative DNA packaging protein of prophage; Escherichia coli O157:H7 ortholog: z1883.
  
    0.830
c3171
Putative capsid structural protein of prophage; Escherichia coli O157:H7 ortholog: z1885.
  
    0.817
nohB
Prophage QSR' DNA packaging protein NU1 homolog; Escherichia coli K-12 ortholog: b0560; Escherichia coli O157:H7 ortholog: z1882.
  
    0.816
c3168
Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z1888.
  
   0.797
c3172
Putative head-tail joining protein of prophage; Required for the stabilization of DNA within the phage head and for attachment of tails onto the head during morphogenesis.
  
    0.780
c3167
Putative DNA packaging protein of prophage; Escherichia coli O157:H7 ortholog: z1889.
  
    0.685
c3166
Putative head-tail joining protein of prophage; Escherichia coli O157:H7 ortholog: z1890.
  
    0.677
c3164
Putative tail component of prophage; Escherichia coli O157:H7 ortholog: z1893.
  
    0.624
c3163
Putative tail component of prophage; Escherichia coli O157:H7 ortholog: z1894.
  
    0.620
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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